INFO @ 04 Jul 2024 22:38:29: [36 MB] # Command line: callpeak -t /tscc/projects/ps-epigen/users/kdang/ASAP/DASeq_broadCT/splitfrags_out/Glutamatergic.bed -f BED -n Glutamatergic -g hs --nomodel --shift -100 --extsize 200 --call-summits --outdir /tscc/projects/ps-epigen/users/kdang/ASAP/DASeq_broadCT/callpeak_out/ # ARGUMENTS LIST: # name = Glutamatergic # format = BED # ChIP-seq file = ['/tscc/projects/ps-epigen/users/kdang/ASAP/DASeq_broadCT/splitfrags_out/Glutamatergic.bed'] # control file = None # effective genome size = 2.91e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 5.00e-02 # The maximum gap between significant sites is assigned as the read length/tag size. # The minimum length of peaks is assigned as the predicted fragment length "d". # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off # Searching for subpeak summits is on INFO @ 04 Jul 2024 22:38:29: [36 MB] #1 read tag files... INFO @ 04 Jul 2024 22:38:29: [36 MB] #1 read treatment tags... INFO @ 04 Jul 2024 22:38:37: [99 MB] 1000000 reads parsed INFO @ 04 Jul 2024 22:38:43: [104 MB] 2000000 reads parsed INFO @ 04 Jul 2024 22:38:50: [106 MB] 3000000 reads parsed INFO @ 04 Jul 2024 22:38:57: [113 MB] 4000000 reads parsed INFO @ 04 Jul 2024 22:39:03: [116 MB] 5000000 reads parsed INFO @ 04 Jul 2024 22:39:10: [122 MB] 6000000 reads parsed INFO @ 04 Jul 2024 22:39:16: [126 MB] 7000000 reads parsed INFO @ 04 Jul 2024 22:39:23: [135 MB] 8000000 reads parsed INFO @ 04 Jul 2024 22:39:29: [137 MB] 9000000 reads parsed INFO @ 04 Jul 2024 22:39:36: [143 MB] 10000000 reads parsed INFO @ 04 Jul 2024 22:39:42: [146 MB] 11000000 reads parsed INFO @ 04 Jul 2024 22:39:49: [151 MB] 12000000 reads parsed INFO @ 04 Jul 2024 22:39:55: [154 MB] 13000000 reads parsed INFO @ 04 Jul 2024 22:40:02: [157 MB] 14000000 reads parsed INFO @ 04 Jul 2024 22:40:08: [162 MB] 15000000 reads parsed INFO @ 04 Jul 2024 22:40:15: [165 MB] 16000000 reads parsed INFO @ 04 Jul 2024 22:40:21: [178 MB] 17000000 reads parsed INFO @ 04 Jul 2024 22:40:28: [185 MB] 18000000 reads parsed INFO @ 04 Jul 2024 22:40:35: [193 MB] 19000000 reads parsed INFO @ 04 Jul 2024 22:40:41: [200 MB] 20000000 reads parsed INFO @ 04 Jul 2024 22:40:48: [206 MB] 21000000 reads parsed INFO @ 04 Jul 2024 22:40:55: [217 MB] 22000000 reads parsed INFO @ 04 Jul 2024 22:41:01: [222 MB] 23000000 reads parsed INFO @ 04 Jul 2024 22:41:08: [228 MB] 24000000 reads parsed INFO @ 04 Jul 2024 22:41:14: [235 MB] 25000000 reads parsed INFO @ 04 Jul 2024 22:41:21: [238 MB] 26000000 reads parsed INFO @ 04 Jul 2024 22:41:27: [243 MB] 27000000 reads parsed INFO @ 04 Jul 2024 22:41:34: [246 MB] 28000000 reads parsed INFO @ 04 Jul 2024 22:41:40: [249 MB] 29000000 reads parsed INFO @ 04 Jul 2024 22:41:47: [253 MB] 30000000 reads parsed INFO @ 04 Jul 2024 22:41:53: [261 MB] 31000000 reads parsed INFO @ 04 Jul 2024 22:42:00: [261 MB] 32000000 reads parsed INFO @ 04 Jul 2024 22:42:06: [277 MB] 33000000 reads parsed INFO @ 04 Jul 2024 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67000000 reads parsed INFO @ 04 Jul 2024 22:45:52: [420 MB] 68000000 reads parsed INFO @ 04 Jul 2024 22:45:59: [424 MB] 69000000 reads parsed INFO @ 04 Jul 2024 22:46:05: [428 MB] 70000000 reads parsed INFO @ 04 Jul 2024 22:46:12: [430 MB] 71000000 reads parsed INFO @ 04 Jul 2024 22:46:18: [446 MB] 72000000 reads parsed INFO @ 04 Jul 2024 22:46:24: [446 MB] 73000000 reads parsed INFO @ 04 Jul 2024 22:46:31: [447 MB] 74000000 reads parsed INFO @ 04 Jul 2024 22:46:37: [450 MB] 75000000 reads parsed INFO @ 04 Jul 2024 22:46:43: [456 MB] 76000000 reads parsed INFO @ 04 Jul 2024 22:46:50: [456 MB] 77000000 reads parsed INFO @ 04 Jul 2024 22:46:56: [456 MB] 78000000 reads parsed INFO @ 04 Jul 2024 22:47:03: [462 MB] 79000000 reads parsed INFO @ 04 Jul 2024 22:47:09: [465 MB] 80000000 reads parsed INFO @ 04 Jul 2024 22:47:16: [475 MB] 81000000 reads parsed INFO @ 04 Jul 2024 22:47:22: [479 MB] 82000000 reads parsed INFO @ 04 Jul 2024 22:47:28: [483 MB] 83000000 reads parsed INFO @ 04 Jul 2024 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parsed INFO @ 04 Jul 2024 22:49:20: [576 MB] 101000000 reads parsed INFO @ 04 Jul 2024 22:49:25: [580 MB] 102000000 reads parsed INFO @ 04 Jul 2024 22:49:31: [584 MB] 103000000 reads parsed INFO @ 04 Jul 2024 22:49:37: [587 MB] 104000000 reads parsed INFO @ 04 Jul 2024 22:49:42: [591 MB] 105000000 reads parsed INFO @ 04 Jul 2024 22:49:48: [596 MB] 106000000 reads parsed INFO @ 04 Jul 2024 22:49:53: [597 MB] 107000000 reads parsed INFO @ 04 Jul 2024 22:49:59: [598 MB] 108000000 reads parsed INFO @ 04 Jul 2024 22:50:05: [601 MB] 109000000 reads parsed INFO @ 04 Jul 2024 22:50:10: [601 MB] 110000000 reads parsed INFO @ 04 Jul 2024 22:50:16: [604 MB] 111000000 reads parsed INFO @ 04 Jul 2024 22:50:21: [608 MB] 112000000 reads parsed INFO @ 04 Jul 2024 22:50:27: [611 MB] 113000000 reads parsed INFO @ 04 Jul 2024 22:50:32: [615 MB] 114000000 reads parsed INFO @ 04 Jul 2024 22:50:38: [619 MB] 115000000 reads parsed INFO @ 04 Jul 2024 22:50:43: [623 MB] 116000000 reads parsed INFO @ 04 Jul 2024 22:50:49: [626 MB] 117000000 reads parsed INFO @ 04 Jul 2024 22:50:54: [645 MB] 118000000 reads parsed INFO @ 04 Jul 2024 22:51:00: [645 MB] 119000000 reads parsed INFO @ 04 Jul 2024 22:51:05: [646 MB] 120000000 reads parsed INFO @ 04 Jul 2024 22:51:11: [650 MB] 121000000 reads parsed INFO @ 04 Jul 2024 22:51:16: [654 MB] 122000000 reads parsed INFO @ 04 Jul 2024 22:51:22: [658 MB] 123000000 reads parsed INFO @ 04 Jul 2024 22:51:27: [661 MB] 124000000 reads parsed INFO @ 04 Jul 2024 22:51:33: [665 MB] 125000000 reads parsed INFO @ 04 Jul 2024 22:51:39: [668 MB] 126000000 reads parsed INFO @ 04 Jul 2024 22:51:44: [668 MB] 127000000 reads parsed INFO @ 04 Jul 2024 22:51:50: [672 MB] 128000000 reads parsed INFO @ 04 Jul 2024 22:51:55: [700 MB] 129000000 reads parsed INFO @ 04 Jul 2024 22:52:01: [702 MB] 130000000 reads parsed INFO @ 04 Jul 2024 22:52:06: [706 MB] 131000000 reads parsed INFO @ 04 Jul 2024 22:52:12: [709 MB] 132000000 reads parsed INFO @ 04 Jul 2024 22:52:17: [713 MB] 133000000 reads parsed INFO @ 04 Jul 2024 22:52:23: [717 MB] 134000000 reads parsed INFO @ 04 Jul 2024 22:52:28: [742 MB] 135000000 reads parsed INFO @ 04 Jul 2024 22:52:34: [743 MB] 136000000 reads parsed INFO @ 04 Jul 2024 22:52:39: [747 MB] 137000000 reads parsed INFO @ 04 Jul 2024 22:52:45: [751 MB] 138000000 reads parsed INFO @ 04 Jul 2024 22:52:50: [755 MB] 139000000 reads parsed INFO @ 04 Jul 2024 22:52:55: [788 MB] 140000000 reads parsed INFO @ 04 Jul 2024 22:53:00: [788 MB] 141000000 reads parsed INFO @ 04 Jul 2024 22:53:04: [788 MB] 142000000 reads parsed INFO @ 04 Jul 2024 22:53:09: [788 MB] 143000000 reads parsed INFO @ 04 Jul 2024 22:53:14: [788 MB] 144000000 reads parsed INFO @ 04 Jul 2024 22:53:18: [788 MB] 145000000 reads parsed INFO @ 04 Jul 2024 22:53:23: [788 MB] 146000000 reads parsed INFO @ 04 Jul 2024 22:53:28: [788 MB] 147000000 reads parsed INFO @ 04 Jul 2024 22:53:33: [789 MB] 148000000 reads parsed INFO @ 04 Jul 2024 22:53:37: [791 MB] 149000000 reads parsed INFO @ 04 Jul 2024 22:53:42: [793 MB] 150000000 reads parsed INFO @ 04 Jul 2024 22:53:47: [797 MB] 151000000 reads parsed INFO @ 04 Jul 2024 22:53:52: [800 MB] 152000000 reads parsed INFO @ 04 Jul 2024 22:53:56: [805 MB] 153000000 reads parsed INFO @ 04 Jul 2024 22:54:01: [808 MB] 154000000 reads parsed INFO @ 04 Jul 2024 22:54:06: [812 MB] 155000000 reads parsed INFO @ 04 Jul 2024 22:54:10: [815 MB] 156000000 reads parsed INFO @ 04 Jul 2024 22:54:15: [819 MB] 157000000 reads parsed INFO @ 04 Jul 2024 22:54:20: [822 MB] 158000000 reads parsed INFO @ 04 Jul 2024 22:54:24: [826 MB] 159000000 reads parsed INFO @ 04 Jul 2024 22:54:29: [830 MB] 160000000 reads parsed INFO @ 04 Jul 2024 22:54:34: [834 MB] 161000000 reads parsed INFO @ 04 Jul 2024 22:54:39: [838 MB] 162000000 reads parsed INFO @ 04 Jul 2024 22:54:43: [841 MB] 163000000 reads parsed INFO @ 04 Jul 2024 22:54:48: [845 MB] 164000000 reads parsed INFO @ 04 Jul 2024 22:54:53: [849 MB] 165000000 reads parsed INFO @ 04 Jul 2024 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182000000 reads parsed INFO @ 04 Jul 2024 22:56:16: [933 MB] 183000000 reads parsed INFO @ 04 Jul 2024 22:56:20: [936 MB] 184000000 reads parsed INFO @ 04 Jul 2024 22:56:24: [940 MB] 185000000 reads parsed INFO @ 04 Jul 2024 22:56:28: [944 MB] 186000000 reads parsed INFO @ 04 Jul 2024 22:56:32: [948 MB] 187000000 reads parsed INFO @ 04 Jul 2024 22:56:36: [951 MB] 188000000 reads parsed INFO @ 04 Jul 2024 22:56:40: [955 MB] 189000000 reads parsed INFO @ 04 Jul 2024 22:56:43: [959 MB] 190000000 reads parsed INFO @ 04 Jul 2024 22:56:47: [963 MB] 191000000 reads parsed INFO @ 04 Jul 2024 22:56:51: [967 MB] 192000000 reads parsed INFO @ 04 Jul 2024 22:56:55: [971 MB] 193000000 reads parsed INFO @ 04 Jul 2024 22:56:59: [974 MB] 194000000 reads parsed INFO @ 04 Jul 2024 22:57:03: [978 MB] 195000000 reads parsed INFO @ 04 Jul 2024 22:57:07: [982 MB] 196000000 reads parsed INFO @ 04 Jul 2024 22:57:11: [986 MB] 197000000 reads parsed INFO @ 04 Jul 2024 22:57:15: [990 MB] 198000000 reads parsed INFO @ 04 Jul 2024 22:57:19: [993 MB] 199000000 reads parsed INFO @ 04 Jul 2024 22:57:23: [997 MB] 200000000 reads parsed INFO @ 04 Jul 2024 22:57:27: [1000 MB] 201000000 reads parsed INFO @ 04 Jul 2024 22:57:31: [1001 MB] 202000000 reads parsed INFO @ 04 Jul 2024 22:57:35: [1005 MB] 203000000 reads parsed INFO @ 04 Jul 2024 22:57:38: [1009 MB] 204000000 reads parsed INFO @ 04 Jul 2024 22:57:42: [1013 MB] 205000000 reads parsed INFO @ 04 Jul 2024 22:57:46: [1016 MB] 206000000 reads parsed INFO @ 04 Jul 2024 22:57:50: [1021 MB] 207000000 reads parsed INFO @ 04 Jul 2024 22:57:54: [1024 MB] 208000000 reads parsed INFO @ 04 Jul 2024 22:57:58: [1028 MB] 209000000 reads parsed INFO @ 04 Jul 2024 22:58:02: [1032 MB] 210000000 reads parsed INFO @ 04 Jul 2024 22:58:06: [1034 MB] 211000000 reads parsed INFO @ 04 Jul 2024 22:58:10: [1038 MB] 212000000 reads parsed INFO @ 04 Jul 2024 22:58:14: [1042 MB] 213000000 reads parsed INFO @ 04 Jul 2024 22:58:18: [1046 MB] 214000000 reads parsed INFO @ 04 Jul 2024 22:58:22: [1050 MB] 215000000 reads parsed INFO @ 04 Jul 2024 22:58:26: [1053 MB] 216000000 reads parsed INFO @ 04 Jul 2024 22:58:30: [1057 MB] 217000000 reads parsed INFO @ 04 Jul 2024 22:58:34: [1061 MB] 218000000 reads parsed INFO @ 04 Jul 2024 22:58:38: [1065 MB] 219000000 reads parsed INFO @ 04 Jul 2024 22:58:41: [1069 MB] 220000000 reads parsed INFO @ 04 Jul 2024 22:58:45: [1072 MB] 221000000 reads parsed INFO @ 04 Jul 2024 22:58:49: [1075 MB] 222000000 reads parsed INFO @ 04 Jul 2024 22:58:53: [1079 MB] 223000000 reads parsed INFO @ 04 Jul 2024 22:58:57: [1083 MB] 224000000 reads parsed INFO @ 04 Jul 2024 22:59:01: [1087 MB] 225000000 reads parsed INFO @ 04 Jul 2024 22:59:05: [1091 MB] 226000000 reads parsed INFO @ 04 Jul 2024 22:59:09: [1095 MB] 227000000 reads parsed INFO @ 04 Jul 2024 22:59:13: [1098 MB] 228000000 reads parsed INFO @ 04 Jul 2024 22:59:17: [1101 MB] 229000000 reads parsed INFO @ 04 Jul 2024 22:59:20: [1104 MB] 230000000 reads parsed INFO @ 04 Jul 2024 22:59:24: [1108 MB] 231000000 reads parsed INFO @ 04 Jul 2024 22:59:27: [1112 MB] 232000000 reads parsed INFO @ 04 Jul 2024 22:59:30: [1116 MB] 233000000 reads parsed INFO @ 04 Jul 2024 22:59:33: [1120 MB] 234000000 reads parsed INFO @ 04 Jul 2024 22:59:36: [1123 MB] 235000000 reads parsed INFO @ 04 Jul 2024 22:59:39: [1127 MB] 236000000 reads parsed INFO @ 04 Jul 2024 22:59:43: [1130 MB] 237000000 reads parsed INFO @ 04 Jul 2024 22:59:49: [1130 MB] #1 tag size is determined as 225 bps INFO @ 04 Jul 2024 22:59:49: [1130 MB] #1 tag size = 225.0 INFO @ 04 Jul 2024 22:59:49: [1130 MB] #1 total tags in treatment: 237027541 INFO @ 04 Jul 2024 22:59:49: [1130 MB] #1 user defined the maximum tags... INFO @ 04 Jul 2024 22:59:49: [1130 MB] #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ 04 Jul 2024 22:59:52: [1130 MB] #1 tags after filtering in treatment: 146596002 INFO @ 04 Jul 2024 22:59:52: [1130 MB] #1 Redundant rate of treatment: 0.38 INFO @ 04 Jul 2024 22:59:52: [1130 MB] #1 finished! INFO @ 04 Jul 2024 22:59:52: [1130 MB] #2 Build Peak Model... INFO @ 04 Jul 2024 22:59:52: [1130 MB] #2 Skipped... INFO @ 04 Jul 2024 22:59:52: [1130 MB] #2 Use 200 as fragment length INFO @ 04 Jul 2024 22:59:52: [1130 MB] #2 Sequencing ends will be shifted towards 5' by 100 bp(s) INFO @ 04 Jul 2024 22:59:52: [1130 MB] #3 Call peaks... INFO @ 04 Jul 2024 22:59:52: [1130 MB] #3 Going to call summits inside each peak ... INFO @ 04 Jul 2024 22:59:52: [1130 MB] #3 Pre-compute pvalue-qvalue table... INFO @ 04 Jul 2024 23:09:34: [2862 MB] #3 Call peaks for each chromosome... INFO @ 04 Jul 2024 23:15:48: [2862 MB] #4 Write output xls file... /tscc/projects/ps-epigen/users/kdang/ASAP/DASeq_broadCT/callpeak_out/Glutamatergic_peaks.xls INFO @ 04 Jul 2024 23:15:50: [2862 MB] #4 Write peak in narrowPeak format file... /tscc/projects/ps-epigen/users/kdang/ASAP/DASeq_broadCT/callpeak_out/Glutamatergic_peaks.narrowPeak INFO @ 04 Jul 2024 23:15:51: [2862 MB] #4 Write summits bed file... /tscc/projects/ps-epigen/users/kdang/ASAP/DASeq_broadCT/callpeak_out/Glutamatergic_summits.bed INFO @ 04 Jul 2024 23:15:52: [2862 MB] Done!