INFO  @ 04 Jul 2024 22:38:29: [36 MB] 
# Command line: callpeak -t /tscc/projects/ps-epigen/users/kdang/ASAP/DASeq_broadCT/splitfrags_out/BFCN.bed -f BED -n BFCN -g hs --nomodel --shift -100 --extsize 200 --call-summits --outdir /tscc/projects/ps-epigen/users/kdang/ASAP/DASeq_broadCT/callpeak_out/
# ARGUMENTS LIST:
# name = BFCN
# format = BED
# ChIP-seq file = ['/tscc/projects/ps-epigen/users/kdang/ASAP/DASeq_broadCT/splitfrags_out/BFCN.bed']
# control file = None
# effective genome size = 2.91e+09
# band width = 300
# model fold = [5, 50]
# qvalue cutoff = 5.00e-02
# The maximum gap between significant sites is assigned as the read length/tag size.
# The minimum length of peaks is assigned as the predicted fragment length "d".
# Larger dataset will be scaled towards smaller dataset.
# Range for calculating regional lambda is: 10000 bps
# Broad region calling is off
# Paired-End mode is off
# Searching for subpeak summits is on
 
INFO  @ 04 Jul 2024 22:38:29: [36 MB] #1 read tag files... 
INFO  @ 04 Jul 2024 22:38:29: [36 MB] #1 read treatment tags... 
INFO  @ 04 Jul 2024 22:38:37: [107 MB]  1000000 reads parsed 
INFO  @ 04 Jul 2024 22:38:43: [115 MB]  2000000 reads parsed 
INFO  @ 04 Jul 2024 22:38:50: [125 MB]  3000000 reads parsed 
INFO  @ 04 Jul 2024 22:38:56: [129 MB]  4000000 reads parsed 
INFO  @ 04 Jul 2024 22:39:03: [140 MB]  5000000 reads parsed 
INFO  @ 04 Jul 2024 22:39:09: [143 MB]  6000000 reads parsed 
INFO  @ 04 Jul 2024 22:39:16: [149 MB]  7000000 reads parsed 
INFO  @ 04 Jul 2024 22:39:22: [153 MB]  8000000 reads parsed 
INFO  @ 04 Jul 2024 22:39:29: [159 MB]  9000000 reads parsed 
INFO  @ 04 Jul 2024 22:39:35: [164 MB]  10000000 reads parsed 
INFO  @ 04 Jul 2024 22:39:42: [168 MB]  11000000 reads parsed 
INFO  @ 04 Jul 2024 22:39:48: [171 MB]  12000000 reads parsed 
INFO  @ 04 Jul 2024 22:39:55: [173 MB]  13000000 reads parsed 
INFO  @ 04 Jul 2024 22:40:01: [187 MB]  14000000 reads parsed 
INFO  @ 04 Jul 2024 22:40:08: [192 MB]  15000000 reads parsed 
INFO  @ 04 Jul 2024 22:40:14: [192 MB]  16000000 reads parsed 
INFO  @ 04 Jul 2024 22:40:21: [197 MB]  17000000 reads parsed 
INFO  @ 04 Jul 2024 22:40:27: [207 MB]  18000000 reads parsed 
INFO  @ 04 Jul 2024 22:40:33: [211 MB]  19000000 reads parsed 
INFO  @ 04 Jul 2024 22:40:40: [218 MB]  20000000 reads parsed 
INFO  @ 04 Jul 2024 22:40:46: [224 MB] #1 tag size is determined as 188 bps 
INFO  @ 04 Jul 2024 22:40:46: [224 MB] #1 tag size = 188.0 
INFO  @ 04 Jul 2024 22:40:46: [224 MB] #1  total tags in treatment: 20847241 
INFO  @ 04 Jul 2024 22:40:46: [224 MB] #1 user defined the maximum tags... 
INFO  @ 04 Jul 2024 22:40:46: [224 MB] #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) 
INFO  @ 04 Jul 2024 22:40:46: [224 MB] #1  tags after filtering in treatment: 18465554 
INFO  @ 04 Jul 2024 22:40:46: [224 MB] #1  Redundant rate of treatment: 0.11 
INFO  @ 04 Jul 2024 22:40:46: [224 MB] #1 finished! 
INFO  @ 04 Jul 2024 22:40:46: [224 MB] #2 Build Peak Model... 
INFO  @ 04 Jul 2024 22:40:46: [224 MB] #2 Skipped... 
INFO  @ 04 Jul 2024 22:40:46: [224 MB] #2 Use 200 as fragment length 
INFO  @ 04 Jul 2024 22:40:46: [224 MB] #2 Sequencing ends will be shifted towards 5' by 100 bp(s) 
INFO  @ 04 Jul 2024 22:40:46: [224 MB] #3 Call peaks... 
INFO  @ 04 Jul 2024 22:40:46: [224 MB] #3 Going to call summits inside each peak ... 
INFO  @ 04 Jul 2024 22:40:46: [224 MB] #3 Pre-compute pvalue-qvalue table... 
INFO  @ 04 Jul 2024 22:44:18: [514 MB] #3 Call peaks for each chromosome... 
INFO  @ 04 Jul 2024 22:48:47: [514 MB] #4 Write output xls file... /tscc/projects/ps-epigen/users/kdang/ASAP/DASeq_broadCT/callpeak_out/BFCN_peaks.xls 
INFO  @ 04 Jul 2024 22:48:49: [514 MB] #4 Write peak in narrowPeak format file... /tscc/projects/ps-epigen/users/kdang/ASAP/DASeq_broadCT/callpeak_out/BFCN_peaks.narrowPeak 
INFO  @ 04 Jul 2024 22:48:50: [514 MB] #4 Write summits bed file... /tscc/projects/ps-epigen/users/kdang/ASAP/DASeq_broadCT/callpeak_out/BFCN_summits.bed 
INFO  @ 04 Jul 2024 22:48:51: [514 MB] Done!